BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB006B01LP1|AL425470
(794 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1044 1542 0.0
>3x_Contig1044
Length = 4552
Score = 1542 bits (777), Expect = 0.0
Identities = 791/795 (99%), Gaps = 1/795 (0%)
Strand = Plus / Minus
Query: 1 aaataccgaaaaaccctggtaagtacgaaaaattgaacctgaggctaaatgaaactgacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2714 aaataccgaaaaaccctggtaagtacgaaaaattgaacctgaggctaaatgaaactgacg 2655
Query: 61 gtactgaaagcgctaaatactacgatgaagtattttcagaagctgaatggaagcaagagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2654 gtactgaaagcgctaaatactacgatgaagtattttcagaagctgaatggaagcaagagt 2595
Query: 121 gcatcgatttggcaacatatgatatatcgcaatggatacttaaaggtcaagatatattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2594 gcatcgatttggcaacatatgatatatcgcaatggatacttaaaggtcaagatatattga 2535
Query: 181 aggaacagcatgcactcatgtgtaggatggtacaagcaagaataaagttatcacatcgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2534 aggaacagcatgcactcatgtgtaggatggtacaagcaagaataaagttatcacatcgtt 2475
Query: 241 ttcaagttatatcagacatcatcaatgaacgggcggaactcttaatccagcagggcgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2474 ttcaagttatatcagacatcatcaatgaacgggcggaactcttaatccagcagggcgaga 2415
Query: 301 ttttagatgcaaaactcaccaaagtacaggatcttgggaaggaaatcctggatttattgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2414 ttttagatgcaaaactcaccaaagtacaggatcttgggaaggaaatcctggatttattgt 2355
Query: 361 agaaatatatatatgtacttgtcagcggcagtataacaagggaagaataaactgtcgctt 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2354 agagatatatatatgtacttgtcagcggcagtataacaagggaagaataaactgtcgctt 2295
Query: 421 ggacaaaggcttaacatatgtttatgttatatttacggatcttctattaatgaagtttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2294 ggacaaaggcttaacatatgtttatgttatatttacggatcttctattaatgaagtttat 2235
Query: 481 ggggaaaattagtattagcttctcatacagctccgactaaaatgacggatttacaacaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2234 ggggaaaattagtattagcttctcatacagctccgactaaaatgacggatttacaacaat 2175
Query: 541 gatcgaataccgatgattaaagatttaaacaagcaactgtagaatcatatacaaaagaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2174 gatcgaataccgatgattaaagatttaaacaagcaactgtagaatcatatacaaaagaaa 2115
Query: 601 taaaaaggatggtacatctttttattattaactaaagttttctagatgataattgcttag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2114 taaaaaggatggtacatctttttattattaactaaagttttctagatgataattgcttag 2055
Query: 661 tttctttttctgaatcttctgtctctaacagcagaaacagaggaaacggataatggcaac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2054 tttctttttctgaatcttctgtctctaacagcagaaacagaggaaacggataatggcaac 1995
Query: 721 ttcaaacccaaagagttgaccaattcagcggtttgagtgtc-acgttcaagacgtcgtta 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1994 ttcaaacccaaagagttgaccaattcagcggtttgagtgtcaacgttcaagacgtcgtta 1935
Query: 780 gagtkagaaaagtcc 794
|||| ||| ||||||
Sbjct: 1934 gagtgagacaagtcc 1920
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7202
Number of Sequences: 1807
Number of extensions: 7202
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 794
length of database: 10,358,551
effective HSP length: 16
effective length of query: 778
effective length of database: 10,329,639
effective search space: 8036459142
effective search space used: 8036459142
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)